NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186622_1027518

Scaffold Ga0186622_1027518


Overview

Basic Information
Taxon OID3300017370 Open in IMG/M
Scaffold IDGa0186622_1027518 Open in IMG/M
Source Dataset NameMetatranscriptome of marine algae-associated eukaryotic communities from Gulf of Mexico in L1 medium with seawater, 25 C, 27 psu salinity and 750 ?mol photons light - Karenia brevis Wilson (MMETSP0649_2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1124
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008601Metatranscriptome330Y

Sequences

Protein IDFamilyRBSSequence
Ga0186622_10275181F008601N/ARLKRLSVYCIRQSFASTNFHNFHSIMSCSSVSILSCFTVLILSSFLSVVEANAFLKASPSLREERVSEEDVQSSLLAEVEGAFGEGAASSRVKQLEAVLSPIFAALPKNEQGYLGHSTVRYALHRLFVKRHGWVIKGLDTEGGHRNSTSSAGLLKEQVPGYIQDLFEKRLGGRGFGLNELAVLAATIEHLVHNEAIKRLGDAMKIHDRLPTSLMNKRQADEVLDTYMTAYIMGEDLSNMTIYDVLDLKAEMPELYLAWNETKDFVRKTRQDVTSSDGTTEQKTSEELDFALVARVAERVGERFGSFQNEECKQIKASLLSLEEPGTGRVRLSDFYKPAVGGHWQFQESVEYLRQLGALDESDPNKPRVIVANYI
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