NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186518_1028077

Scaffold Ga0186518_1028077


Overview

Basic Information
Taxon OID3300017371 Open in IMG/M
Scaffold IDGa0186518_1028077 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Atlantic Ocean in K/2 medium, 20 C, 35 psu salinity and 555 ?mol photons light - Pelagodinium beii RCC 1491 (MMETSP1338)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)835
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003025Metagenome / Metatranscriptome512Y

Sequences

Protein IDFamilyRBSSequence
Ga0186518_10280771F003025N/ACNKEFWSKWVPRRLKHNAFVFCLWACVWLLGTWPLGRDLSEGWRFMFTVSFFARCGYGAAWMFITNFTHSLPWNQFLAHDPGRTWPVLHNVMAFVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWQKVHDAAAEVLHRGLWKANGDEETEMQKTQKKRSMMMKSGKK
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