NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186623_1060523

Scaffold Ga0186623_1060523


Overview

Basic Information
Taxon OID3300017378 Open in IMG/M
Scaffold IDGa0186623_1060523 Open in IMG/M
Source Dataset NameMetatranscriptome of marine algae-associated eukaryotic communities from Gulf of Mexico in L1 medium with seawater, 25 C, 27 psu salinity and 749 ?mol photons light - Karenia brevis SP1 (MMETSP0574)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)595
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063312Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0186623_10605231F063312N/AMPEFKLVVNDNNKATELPLCRIGGSVQANPHMRAFWGATISFFLAFLGWFALAPLALDVAKSMEICENQLYPPLENPKRKAYLKFKNLKTEKFYCRYGKNNKNKPTDCNPVPDDVMSKPICSATVTENCANQDDRSAYDPKVLTKCVCTGGTECKSVLANAGVASVASTIFVRVA
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