NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186634_1012136

Scaffold Ga0186634_1012136


Overview

Basic Information
Taxon OID3300017379 Open in IMG/M
Scaffold IDGa0186634_1012136 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater ice eukaryotic communities from Arabian Sea in f/2 medium with sea water w/o silica, 3 C, 3 psu salinity and 697 ?mol photons light - Peridinium aciculiferum PAER-2 (MMETSP0371)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1368
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameArabian Sea
CoordinatesLat. (o)18.6Long. (o)59.85Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082720Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0186634_10121361F082720N/AMGTVTPDFRSFTKVGFEGRLSVVSEREVHHGGVHRYLVQFSSGELSVADGVGFVFSSRLPCSKNIQRIVSIFVNQRGRICMRIFADIVRASACVKPLELGDWVELTMDLDEHVASFSIWPRGAAGWPSTGGHPTSTAVFPYGQRLSKVNQAGHKSAKLNVGHLACVVKNVGVTITVAS
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