NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186687_1029878

Scaffold Ga0186687_1029878


Overview

Basic Information
Taxon OID3300017381 Open in IMG/M
Scaffold IDGa0186687_1029878 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal eukaryotic communities from Indian River Bay, Delaware, USA in L1 medium, 22 C, 34 psu salinity and 709 ?mol photons light - Prorocentrum minimum CCMP 2233 (MMETSP0268)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)854
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameUSA: Indian River Bay, Delaware
CoordinatesLat. (o)38.59Long. (o)-75.1Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002906Metagenome / Metatranscriptome521Y

Sequences

Protein IDFamilyRBSSequence
Ga0186687_10298781F002906GGALQNVLGQRFDLMKSGKHILINIPRGSLVNAMLRVEAEARQLGGQCADMYSGELNITGAWVTAKGTSGLRFQAQGVSDKNPHWLQFGAVQLKIAHGRTDHGAPYLNFYVKHLGRAGFAIGGLLGEDDHTEAAMPSKACAHRLSLLEKVVSGHQRDVVLSFAEASLA
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