Basic Information | |
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Taxon OID | 3300017381 Open in IMG/M |
Scaffold ID | Ga0186687_1032317 Open in IMG/M |
Source Dataset Name | Metatranscriptome of coastal eukaryotic communities from Indian River Bay, Delaware, USA in L1 medium, 22 C, 34 psu salinity and 709 ?mol photons light - Prorocentrum minimum CCMP 2233 (MMETSP0268) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | National Center for Genome Resources |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 792 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Indian River Bay, Delaware | |||||||
Coordinates | Lat. (o) | 38.59 | Long. (o) | -75.1 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002906 | Metagenome / Metatranscriptome | 521 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0186687_10323172 | F002906 | GGAG | MAGGAGGVAATGDPHLQNVLGQRFDLMKPGKHVLINIPRGRRTKALLRVQADASQVGGHCADLYFQELNITGEWVKVKGTVGLRFQAQGVHDGQPKWFKFGAVQMKVAFGHTQSGVQYLNFYVKHLGQSGFAVGGLLGEDDHTEAAMPSGACAHHVSLLQVPSQTDQSALAFSVAEASFD |
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