NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186481_1028717

Scaffold Ga0186481_1028717


Overview

Basic Information
Taxon OID3300017382 Open in IMG/M
Scaffold IDGa0186481_1028717 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Baltic Sea in f/2 medium with sea water w/o silica, 3 C, 3 psu salinity and 693 ?mol photons light - Scrippsiella Hangoei SHTV-5 (MMETSP0360)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)822
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)59.51Long. (o)23.13Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000631Metagenome / Metatranscriptome971Y

Sequences

Protein IDFamilyRBSSequence
Ga0186481_10287171F000631N/ALKCPDGSSSLKHPSPPPPRDAQPSARRLGIRAAMKSVAVAFFAVVSSLATSGIDAAMLRKQARQEPDTACGKGFDNLVKGSQDYYRTAAVELFTHPSHTMDNATFEAEFECWFASMCTTKCGGLASQADSRKAKLTEMCQSVEADWLKIWKMFSQDEIKWFKNSYPSDEVEGSEEGSEVHYKQAMETAKEVSKKELLCMTLFTIDDECVKWPYIRLTK
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