Scaffold Ga0182208_1118756

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182208_1118756

Scaffold Ga0182208_1118756

Overview

Basic Information
Taxon OID	3300017411 Open in IMG/M
Scaffold ID	Ga0182208_1118756 Open in IMG/M
Source Dataset Name	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_12SEP2016_LD1 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	517
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	42.39	Long. (^o)	-85.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008472	Metagenome	332	Y
F013268	Metagenome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182208_11187561	F008472	AGGA	LTRSQKRRVQCLRNRELEQAQASGKPQVWRAKQTADRRQPSANIQITFLLPLEFRAPADQEVYSNFDESEYEEIIAKLTV
Ga0182208_11187562	F013268	GGA	MEVFIIGLEKELLIMTGLIMKKKATRENMFGRKANGVQEV

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