Basic Information | |
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Taxon OID | 3300017478 Open in IMG/M |
Scaffold ID | Ga0186405_1013365 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic communities from La Jolla, California in f/2 medium with natural seawater and antibiotics, no silicate, 22 C, 21 psu salinity and 620 ?mol photons light - Kryptoperidinium foliaceum CCMP 1326 (MMETSP0121_2) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | National Center for Genome Resources |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1290 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Scripps Institute of Oceanography, pier, La Jolla, California | |||||||
Coordinates | Lat. (o) | 32.9 | Long. (o) | -117.255 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F052607 | Metatranscriptome | 142 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0186405_10133651 | F052607 | N/A | RDPGRAGAQCPPSRRPRLPSSPAPAMFRSGAEQKCPGLKLPCVPHIGHYNDGMDYKLARTLGAVRFMREPHGKIPSSGFDLLMRRDNVHDVEVYLALYDMQDLRDWVLTSGRMYIVNLLYHPWLFPRLAYRGEEGANVEVAVFENAGAYPVMDSPQGVGKNLRSFEQRVWVKDKVYMCMGPDAIQLRIDRHRLVCSFWSLCVPEGEERAIVTKHVLINESRTHITREVSTACADIGDASVASVLRHLQKLLTAVQGATNRLSKLMGRCEGAFEGVPYQGNDQPMPVWEEQLALLDRSVNDGSRPEEGAPLLSEMIRRRVYEDMGRRRRKGKFPADDDETIEAGQRAFMTPVGATDAERAQAIHRVIIECIHDLEQLAECNAELLSVEGVTT |
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