NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186655_1011948

Scaffold Ga0186655_1011948


Overview

Basic Information
Taxon OID3300017479 Open in IMG/M
Scaffold IDGa0186655_1011948 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal eukaryotic communities from South Pacific Ocean in L1 medium, 22 C, 20 psu salinity and 668 ?mol photons light - Karlodinium veneficum CCMP 2283 (MMETSP1015)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1679
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameSouth Pacific Ocean
CoordinatesLat. (o)-32.2167Long. (o)-80.7355Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044509Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0186655_10119481F044509AGGCGGMAKYTTVAEMEAHWAANAPEDDVRVRDAHCHEVVMWFVHHLTSQEQNRVMLTTTLPMLPITDHTSGRGKRAIEDRAGKFYDEKVTCQNCHVGGIPNLGATEVKPTTAKQLARRCYTNYKDLFGIECGPCDGIAGKYWGDNDDKDFTPTACEVVAKPEDVPEAEQVKAKLPEQFTVDVVGGSDRFGRTTNPAFDQLPGPIAKLYGQISGKWFMDAKADSDLWLLRHDTTYESVTENGFPIPFIKPHVSEIHAQTAKQRSQNCTGPMVSLIHGMPDWMPGGCTCMPDPVGVPDTQATAPSVGMATMQYMGRIRLPSVEYLNVEMELDHWANWFFHIFMDTNKSVPHYAKAPSRLASAYAGTAVYANWIMEDPKIKDPEVWTRGIPTSPQKVGPSKGKFCMDTKKSPICSNISQSTFPPAPQAADTPSTEGCGTKNHVTQPRSPFFPSVHAIMEAIGKS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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