NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186654_1038507

Scaffold Ga0186654_1038507


Overview

Basic Information
Taxon OID3300017481 Open in IMG/M
Scaffold IDGa0186654_1038507 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal eukaryotic communities from South Pacific Ocean in L1 medium, 22 C, 20 psu salinity and 674 ?mol photons light - Karlodinium veneficum CCMP 2283 (MMETSP1017)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)669
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameSouth Pacific Ocean
CoordinatesLat. (o)-32.2167Long. (o)-80.7355Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002650Metatranscriptome539Y

Sequences

Protein IDFamilyRBSSequence
Ga0186654_10385071F002650N/ALKCVWAEVLACTAGNADIVPNKIQIMQFARQLSVCIFVLARLYSVNASNLRSAPDVASEVQSEMQQNIQIHDGFLEQEGQDAQTMSAVRADHDLSQLQVRAGGKWFVALDKDMKTKMLVQSSPQSLALASGIKDPCSGITCGALECPAGFSVTEVEGHCCPYCVNPDVKVEAAITGATGTNGGVASTFCPKVWCFPTMCTKAEVAPTTTNGACCASCPAL
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Institute for Fundamental Biomedical Research
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