Scaffold Ga0186257_1025394

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0186257_1025394

Scaffold Ga0186257_1025394

Overview

Basic Information
Taxon OID	3300017487 Open in IMG/M
Scaffold ID	Ga0186257_1025394 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic communities from Penn Cove, Washington, USA in F/2 medium with seawater, 15 C, 30 psu salinity and 102 ?mol photons light - Mesodinium pulex SPMC105 (MMETSP0467)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	National Center for Genome Resources
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	846
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	48.5	Long. (^o)	-122.6	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052609	Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186257_10253941	F052609	AGG	MGRSFASFWETTCQEIKTSLVAMDKEGSGRVRLSDFYGANGQGEWRFGESEAYLRELGALDESSPARGPQVIIPNYLQAASNCIVSRKHYLVCCANECEDVLGEVEAAVGAPLAQPMDVLWVVGNLTSYDDDAAPVTEELVGQLRRIASSHVGRVP

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.