Scaffold Ga0186459_1058009

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0186459_1058009

Scaffold Ga0186459_1058009

Overview

Basic Information
Taxon OID	3300017495 Open in IMG/M
Scaffold ID	Ga0186459_1058009 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic communities from English Channel in f/20 medium with seawater, no silicate, 18 C, 30 psu salinity and 325 ?mol photons light - Alexandrium tamarense CCMP 1771 (MMETSP0382)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	National Center for Genome Resources
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	554
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium andersonii	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name	English Channel
Coordinates	Lat. (^o)	50.6	Long. (^o)	4.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001939	Metatranscriptome	614	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186459_10580091	F001939	AGGAG	MSALAALCFVAVASGARMRSRETPDEVKLGMDYRAEDSFGNTALTPACSKIECGSYSCPTPFELKVDGTCCGYCWAPDHVVAADRHAVVEYNATGFAVQQCESAPSTCRGPGADAVRCFKPSCRAGDTVHCAAGACCPMCATR

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