NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186372_1041879

Scaffold Ga0186372_1041879


Overview

Basic Information
Taxon OID3300017503 Open in IMG/M
Scaffold IDGa0186372_1041879 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from North Atlantic Ocean in f/2 medium with seawater, no silicate, 15 C, 29.4 psu salinity and 472 ?mol photons light - Neoceratium fusus PA161109 (MMETSP1074)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)785
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)41.57083Long. (o)-71.40517Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012947Metatranscriptome275Y

Sequences

Protein IDFamilyRBSSequence
Ga0186372_10418791F012947N/ALAQGFLFAGSCQLQLVTQLMATLRRSRGLLPVIVAAVASLLLAGTAFIASPKATPKSSFNPVLAASSFLPVLTMLADDAEAKYGDSRRWSAVMVPLTTLVLPGIAAGTFVLWLFSDDLWWQRNPDSKKWKAYQQRWKEHAVTADVADPFSGLINKDDFEEGFVEAWEKAKPAGCKIDARKKLRELEKQNNPHWRPNRLAAQPLSA
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