NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186477_1034334

Scaffold Ga0186477_1034334


Overview

Basic Information
Taxon OID3300017504 Open in IMG/M
Scaffold IDGa0186477_1034334 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Baltic Sea in MWC medium with 4.55 nmol/L selenium, 3 C, 0 psu salinity and 306 ?mol photons light - Scrippsiella Hangoei SHTV-5 (MMETSP0359)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1100
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)59.51Long. (o)23.13Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016002Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0186477_10343341F016002N/AMLSPRLDWMLGCCSGAGCDSYGGQAELQVHLSSDRSSQSKQHVLTRGDSFDITFTPRSFGDPTGQHEITLESSTSRSGPLTPRQQNLRSQLELPSLNTYPVPPNSGPEDTEEERKGKLLQLYQEFALDLHTGMYLTQLTSNRDYSDIHCQLMEDMTTLKLDQSNGRIIEFPLTNVSKVYRIVKNDDRWYTAGASPPAGANLNTEQIVVVEFMRRKLAFVFKELQVSQRFLICMELLIRRAQQKQAKKALRSLTPTFPPQNAQSRQCPTPRQVHEVGPKPPATGR
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