NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186460_1049771

Scaffold Ga0186460_1049771


Overview

Basic Information
Taxon OID3300017515 Open in IMG/M
Scaffold IDGa0186460_1049771 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from English Channel in f/20 medium with seawater, no silicate, 18 C, 30 psu salinity and 321 ?mol photons light - Alexandrium tamarense CCMP 1771 (MMETSP0384)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)695
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameEnglish Channel
CoordinatesLat. (o)50.6Long. (o)4.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000631Metagenome / Metatranscriptome971Y

Sequences

Protein IDFamilyRBSSequence
Ga0186460_10497711F000631N/AFWLRLRRGLQLPGDSRAVASPAAMQHQSSTCLATVVALALASQGMALREGRTGQEPDTACGKGFENLVKGSRDYYATASVALWTHPSHTMDNATFQREFQCWFASMCTSKCGGLPSKAESRKKALSAQCRSPQATWLQVWSLFGQEEVAWFKRNFPAEEVGADQDQSTVHYKQAMQTAKEVNKKELLCLTLFTIDDECVKWPYIRLA
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