NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134074_1018390

Scaffold Ga0134074_1018390


Overview

Basic Information
Taxon OID3300017657 Open in IMG/M
Scaffold IDGa0134074_1018390 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2292
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072200Metagenome / Metatranscriptome121N
F097061Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0134074_10183902F072200GGAGGMRKLIGSAVLAAALFVTPTLAAAQRRAAAETGPKHEFGIDLAFQYVSLGSNGGSGVQLAAPVDARIGVLSRSPNMFEIRASLNWDSNLGAIAFAPGVNVLHVLKRGSGTRGLMRAPYATGGVGLNIFKFGSGASTETQFALGAGVGKRLPYGSAVFRPEGFIAYAFSSGALPSAFSLGVRLGLSFWH
Ga0134074_10183904F097061AGGGGGMKRALAVLMLAAFGTAPAAAQWLGMPSWNSPKGGGVAISADYGQPNADARKGTAYGARLSLGVGTGTLTAGASSWQPATFSTRVTSFGGSLGLRLIGGSLLPVVVNLQLGGAYNNKVTSGTQTLPEATTAQGAVGLSTPLPVPMIRLEPYFSPGVRYHRYWNVPVGARKEETN
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