NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134074_1050757

Scaffold Ga0134074_1050757


Overview

Basic Information
Taxon OID3300017657 Open in IMG/M
Scaffold IDGa0134074_1050757 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1402
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006542Metagenome / Metatranscriptome370Y
F039568Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0134074_10507572F039568GAGGMAQEPSQPVANSLGFVTFAKCFCINPVYINPVHGGGYYKKRKGWVLIDLVTRAETYFKTLRDAKHHLIRLYKEAAPKKIATQGC
Ga0134074_10507573F006542GAGGMNETELSDLMTAPGFFRFLAQQVKLDPEEVKRIYRLGTPWGLWPPDLDLSYETAEAGVDVFTYLAALQPLLDMDTKEKESQLAAYEATLTGGETTQPIPAVRAHVEKVAALSGKDKETICSLLHALYAYRQRVGRLSIEKVGQFMSRHKMEPEKAASIAKLQRVMVAEIEQRKRLL
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