NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182216_1062993

Scaffold Ga0182216_1062993


Overview

Basic Information
Taxon OID3300017693 Open in IMG/M
Scaffold IDGa0182216_1062993 Open in IMG/M
Source Dataset NameSwitchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)824
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000285Metagenome / Metatranscriptome1374Y
F000330Metagenome / Metatranscriptome1285Y

Sequences

Protein IDFamilyRBSSequence
Ga0182216_10629931F000285N/AVYSRLFGCLTKLSAKWAELVQMFVPRRRVGIFRTERTRSTPLDPKLTFWCVSNYLGASRTVWLPYETRCKMGRKVQKFVPRSRVRIFSNERTRFSHLDPKLMFWCVSYYLGSIGTVWLPYESRCKMGRTSAKLRATKSRRNFSQRTHSIHAIGP
Ga0182216_10629932F000330GGTGGVRLLRKIPTRLRGTNFCTSSARFAPSFLRHPNGPDCTQIVRNAPKHQFRVQMGESGAFVAKNSDTTSWHELLHF
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Institute for Fundamental Biomedical Research
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