Scaffold Ga0180121_10003962

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0180121_10003962

Scaffold Ga0180121_10003962

Overview

Basic Information
Taxon OID	3300017695 Open in IMG/M
Scaffold ID	Ga0180121_10003962 Open in IMG/M
Source Dataset Name	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5883
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location Name	Antarctica: Dry Valley
Coordinates	Lat. (^o)	-78.024	Long. (^o)	163.9124	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000584	Metagenome / Metatranscriptome	1007	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180121_100039627	F000584	GGAGG	VARKTHHKHSSTKGYRRLLDGLAALDGVHSVATGRVKPRMGSGRPVAAISKVRTTESGLSITINADGAIVDAYVVTDRPDEVAAAIAERGWSTSP

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