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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017697 Open in IMG/M |
| Scaffold ID | Ga0180120_10000153 Open in IMG/M |
| Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34038 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (66.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Chesapeake Bay | |||||||
| Coordinates | Lat. (o) | 37.1043 | Long. (o) | -76.1811 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009762 | Metagenome / Metatranscriptome | 313 | Y |
| F037431 | Metagenome / Metatranscriptome | 168 | Y |
| F042637 | Metagenome / Metatranscriptome | 158 | Y |
| F059370 | Metagenome / Metatranscriptome | 134 | Y |
| F067686 | Metagenome / Metatranscriptome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0180120_1000015310 | F009762 | AGGA | MKKHIQKKWHKNFFIETDYKVPVNFWDDYFNGKWEDSNKLYSEYVDEATDGKQMNKFYVQEINNFDRKLLRLIKNIWNEFGLRPKEFRCNFFRVKEGGELPIHADVKSKCSFVIPITENTGELYFDDGTDGDSILYDSMVVLNTKKPHGVRSPSKERIVFHMGIHDVGFEELK |
| Ga0180120_1000015319 | F059370 | N/A | MIDVYCVNVGTKYDRDFDRKLKDSVAKHLTLEHTFTCLTDKPEKEYDKPVTHPELRGVFHKLSLFQFTGNCLFFDLDILINDNIDFLANEFNGLTLVNSSPWKQQSLKEPVKFRITQNTLVNSSIMRWTDETKVFERFMKHRDLYVRLYSGIDRFIYNEDVKYKYFMGDAISSWQEGVKHNTILLHNQKYV |
| Ga0180120_1000015320 | F042637 | N/A | MAIFSGKIIEAYFANSENNTVEVIYREGDKAINHYLAVDFNNQDFKDLIAEYDTDKIAEATIARNRKYAQQLSDMVDAGIKAKTDVKQRISVEDFVKKILEFDHNNEECKEILFTMKVQMFETKKLKNSADKEQKSKLRSAKTPMDLLIEYKKIND |
| Ga0180120_100001533 | F037431 | AGG | MKYKTDRPFSQEALKNMDIIHDPNPSFFKCQYDESYVVKDFINDVERDVLSSFFKDNFEKIGMNINDHVLHITHPMDIKQISDIVRPKIYKHFGDDIVFYSDVAKDDPMSVGDQFFKSVKPYGLHTDAVTHINGYRPYKDIIIPIDLDKVEETHYVTFNQRYRGRATHFMRGRDISSFANYANVIRHQSYEDYGVEGIEHNEKDMHILEKIMPKHIPMSIYEGLSIEKILKWRPKDALIHDSSVLHAPTDFREQGAEYKTGLTLHLMKADATYNNRLEGYYTPFSRYTKPLIKA |
| Ga0180120_100001536 | F067686 | GAGG | MPGDITHYELPEFLSNEVKQELLDIGMNLKDEDWTVHKSTRTGKPSVLNFYDLKRTFHGRNCYLVMIRPNAVQDWHTDGGKRNTALIYPLTEDYAPCRFQPGETASPMFLNTQSRHAVFNNNNKRINLNISFEDDIEDCIEFYKCLKFFKGDNAYEFDPS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |