NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181364_1001907

Scaffold Ga0181364_1001907


Overview

Basic Information
Taxon OID3300017701 Open in IMG/M
Scaffold IDGa0181364_1001907 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3701
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003659Metagenome / Metatranscriptome474Y
F008615Metagenome / Metatranscriptome330N
F016114Metagenome / Metatranscriptome249Y
F043836Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
Ga0181364_10019071F043836N/AIGNTAKRGEYTIPKYGSNLLTFNVRTYYKQLGPALGVLISKIGNINEVKVRLKGKLYVQTVPGVFAPVPFDITDTAINLYKQFN
Ga0181364_10019072F003659N/AMRPEDVVGRYLIAREDVPVYNFPNGTRIGELKKGNSTAEVYSYVVKPGGQVWWQFDYTIPGQTPSAYYVLQKDGRFSLSSAQGNVIVSPTSLPSVDVFPKGSQVKTFALYGIIGVLALLLLKK
Ga0181364_10019077F008615N/AMNAPNTFGAKMFGRFISKGWHITFTDSYQDRVCVIPPDRLDAQHVFGIYIPVMRHTWQPDLKREWWAALQTKDCMLGPKFEATAHPDDIERFAAFAAWIGDLLRNPEKFT
Ga0181364_10019079F016114N/AMKNFTHEDYWAAAFFDSRNTEVINDMAAMARRQLICVRELQRDELLRLKMKYPHLTTRD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.