NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181364_1009994

Scaffold Ga0181364_1009994


Overview

Basic Information
Taxon OID3300017701 Open in IMG/M
Scaffold IDGa0181364_1009994 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1601
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018714Metagenome233Y
F047054Metagenome / Metatranscriptome150N
F093863Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0181364_10099943F018714GAGGMTDFEYHKTLVIGVIIGASVCILGFYMLKPENPPVTPKTNFAVVDTYKGCDIVQWSDNQMATYKYFLDCSK
Ga0181364_10099945F093863GAGGMTNLINKLLAKFNLKLVYIKQKPDLSLVKASVKFLNENPKFVSDQVKPNDFYWGDINYVQKRVDGEFPQVSGETYYKSQHSQYEKYFCDYNADEKTLSKEDLKKIYDETTFTTEQLKNKL
Ga0181364_10099946F047054GGAGMRSGTNLMTNTHSQDLIDDNLKYTLRPRIKDRTKVISAALQYVLNNDLVNRKYLEKIVQELEEMNE
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