Scaffold Ga0181367_1001538

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181367_1001538

Scaffold Ga0181367_1001538

Overview

Basic Information
Taxon OID	3300017703 Open in IMG/M
Scaffold ID	Ga0181367_1001538 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4217
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-20.099	Long. (^o)	-70.892	Alt. (m)		Depth (m)	160
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F011337	Metagenome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181367_10015382	F000245	GGA	MKTFKEYRYQQKLDKYVSDEIKKRKLAKFPVNATDDYKMKQGKPVFKFPSPTGENMIYVWLRPMAKPASKDTKAFNYQLEDK
Ga0181367_10015386	F011337	AGGAG	LLRFKQYIAELGVSPFKIAGKPAWTESLSTMLFDLPRAGIKDIKIPLSPAIMRRIWPKPVRTTVFHLTDYDGLGKLKKMQGGKRSVSAFFNIEPIIIETGIKSKGGFVIEMDADVLVASQDDIASQPDKTGRRWITLSSLMNKPTDADPGLGGGAKLKGMEKDIKALLTEIVKKNSEGVKFSGTTSEIATMWSGLGKSTGGKEKSLIIKDYIDGMEKVMKKHSKVLGTLLTDYTKKRI

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