Scaffold Ga0181367_1004301

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181367_1004301

Scaffold Ga0181367_1004301

Overview

Basic Information
Taxon OID	3300017703 Open in IMG/M
Scaffold ID	Ga0181367_1004301 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2632
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-20.099	Long. (^o)	-70.892	Alt. (m)		Depth (m)	160
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044423	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181367_10043015	F044423	GGAG	LRKNSKENFKSLTAQSSSIFHNPRRSWEDMCFALAGLDRITARYARLKYANETSHYAELSNYVCKEVVKIAKEQGWKHRPKGSRSNEPPVGVDGLFAFRLAELALQENVGSDRCRRCNGRGTIHTGYKSMDCFSCKGSGILRRTEDYRAKFMGINRTTWHRLWKYRFRRHVLGIFDVFEFEISKELGRRL

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