NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181367_1042834

Scaffold Ga0181367_1042834


Overview

Basic Information
Taxon OID3300017703 Open in IMG/M
Scaffold IDGa0181367_1042834 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)804
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)160
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024418Metagenome206Y
F035078Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0181367_10428341F035078GAGGMKEQETKIEKFRSYLLWRIQEKRVGTIDYNSEGIPTFEVEPELSNYTWVFDLADREGVIAESAGIATKITITEEKTNE
Ga0181367_10428342F024418GGAGMIGKLVRHIEFDAIGIVVDHFVCFTRGVGSEWEGGYKIKFLKPHPPTGDLVNPFETIIGKASNFEEVINESR

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