NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181371_1007442

Scaffold Ga0181371_1007442


Overview

Basic Information
Taxon OID3300017704 Open in IMG/M
Scaffold IDGa0181371_1007442 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1904
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)160
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005399Metagenome / Metatranscriptome402Y
F078830Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0181371_10074423F078830AGAAGMKKKMKIGYKVFIGNEVVFRTNDLKNALNTISKIFNDGHTDDYLYGGKFGYWWK
Ga0181371_10074424F005399AGGMRAAIELDVFQEMKLEENTGEIVMRPMAEMMDAPLDFIDEKDEPEWTPLLEVLTETIIDPYTVPASTEVPNEKDYHMMVAASEDLVKVAGDFARKVEGLHTIDPKEYQERMERFKQGTFWPSEDHALNEEENENRL

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