Scaffold Ga0181372

Basic Information
Taxon OID	3300017705 Open in IMG/M
Scaffold ID	Ga0181372_1000924 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017705 Open in IMG/M

Scaffold ID

Ga0181372_1000924 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7079
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (88.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7079

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (88.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-20.1	Long. (^o)	-70.419	Alt. (m)	Depth (m)	85
Location on Map

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Source Dataset Sampling Location

Location Name

Subarctic Pacific Ocean

Coordinates

Lat. (^o)

-20.1

Long. (^o)

-70.419

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F012507	Metagenome	280	Y
F014672	Metagenome	261	Y
F037424	Metagenome	168	Y
F037480	Metagenome	168	Y
F086310	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181372_100092412	F037424	AGGAG	MSWSGTVTCSHCYRQGHNKRKCEKLTEQISDKYTGNVLAAASERERGNENDAVWYDERAENYRQQYIKRTKIDLATGKQVKNKTAKAERMKNVTCGYCQLRGHTRRVCEVVKRDKLVFIEESRRVRAGALEAARETGIGVGSMIPMRLNGYNADGEWGTHTTLRYVKSVDWHTVTAARAGLWVYHVHATKLASANQSRWTARDKILKMDENFKEARDVAELADERAPTASLIPSLDPPDGWLDCEPSTIDVAAAFPTKGNKHEKQRGHDYSWPSGVTAEVIRDLGLEEHWKGRF
Ga0181372_100092413	F086310	GGAG	MQVGNLVKHALTEQIGIVMTTVADRPDIAVFSSVRVMWTTQGDSLFGPGHKEWCNPRSLDLLTTA
Ga0181372_100092414	F004771	AGG	VHGIKIGDLVRMKTHNTGFVGLVVDRDYHRSSIQVGIKWLGGSGKTDWEPESWVEVVSES
Ga0181372_100092417	F014672	GAGG	VFKIGDLVKIRDGTHAAEIPDHRAGMIIDRADASGNYTEFYTIVFLGTGTQLKFHEMFLEHFTSS
Ga0181372_100092418	F037480	N/A	VQVGDLVHMPGSIYPATGVVLRTKPDGINRGTPSLHRVKVYWIEDAEASWEPTKWLEVLSVQDR
Ga0181372_10009248	F012507	N/A	MSTIWTDKLQVGDLLYSFRDGKPAIILDKQETARAKYGDIANKRYRFKLHIDGEQGWLDEVRLRTQYKLP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181372_1000924

Overview

Ecosystem & Geography

Associated Families

Sequences