NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181377_1000066

Scaffold Ga0181377_1000066


Overview

Basic Information
Taxon OID3300017706 Open in IMG/M
Scaffold IDGa0181377_1000066 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42316
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (53.70%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008946Metagenome / Metatranscriptome325Y
F009459Metagenome317Y
F027182Metagenome / Metatranscriptome195N
F042875Metagenome157N

Sequences

Protein IDFamilyRBSSequence
Ga0181377_10000663F027182N/AMANILQQIGTTVKSKLDEKVNKTDAVTDFLKSILGFPEDTVSPEVDTAANITARNSDDQGTIMYGSDTYYLYVFDGSNWQVYNNS
Ga0181377_100006640F009459N/AMTVKVLQPSDMIEELMFYIHQNEMGGECLDPDNRFFPLYLELQKLLDKLNNDYVSVKNEK
Ga0181377_100006648F042875AGTAGMNNNDQTDSFMFDLDNLIRRYQQEFDLNDQTIVGSLEFAKLTVLTDGDILFTPEDLDDSDDDLISPNF
Ga0181377_10000666F008946GGAMARPARRPVVRPNPLTFQQRTISAVSSAVATENKEKAENLQTKVRSLESDPFFVTIDGGSPVLDETDIFDGGQADA
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