NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181377_1000110

Scaffold Ga0181377_1000110


Overview

Basic Information
Taxon OID3300017706 Open in IMG/M
Scaffold IDGa0181377_1000110 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32085
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (89.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005433Metagenome / Metatranscriptome401Y
F022758Metagenome / Metatranscriptome213Y
F031062Metagenome / Metatranscriptome183Y
F051480Metagenome / Metatranscriptome144Y
F068149Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0181377_100011017F031062AGGAMNHRDFEIARKKERTKRSHKAIHKKQLQRPLSRPRADKNMLASDPRLQKI
Ga0181377_100011027F051480N/AMENWCRLGHRKFFRGLIASRQPEEVVALIESYNKNLKAIEGSYLDVVIRSEGAFSYQDIMTMPVDAIKLLVERMNARVEDINKARKGPKR
Ga0181377_100011028F068149N/AMKANKPHMTLDEFQTKFLQFAEQQVEPLKDDGYPVCPYAKSARIKRALQFLDGRTDITVMDNFDHKTFQMGIVWLGDIDDITPIEKICEEYRKKNPHLLYFTSTRQSGHFVKNFTDCVFIQRADDLLLKRKHLHDNTKYYDSWPKEYYKLIMGH
Ga0181377_10001108F005433AGGAGMSIRTRFEIETFVLGAHPTPARKAHALTQELMQAREQQHPDLPVLEEVYKNFSAEHDVDALLANINDSEEEYWVHRLAKLAAVDILTIGKVQPEHMNYMVALEDEAFSACVKETTSIAKQLNYEVQQIEAELQSELASEK
Ga0181377_10001109F022758AGGAGMALPATGNEITMGEVRNYFGLSGNISMSTLGAYISPSVSTNIALSSTFGGWQNPNSTGAD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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