NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181377_1007163

Scaffold Ga0181377_1007163


Overview

Basic Information
Taxon OID3300017706 Open in IMG/M
Scaffold IDGa0181377_1007163 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2853
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035273Metagenome172Y
F040601Metagenome161Y
F046983Metagenome150Y
F085562Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0181377_10071635F085562GAGMDEFTRKSTQHMDQKLVKQAIKAIDKSPELKKIRSIKDGMSYSEINTGVNDQQYKDNYDNIKWTKSNEKKSFKVRVNGKVINPDED
Ga0181377_10071636F046983AGGAGMKLPEYLNKESTHHTLGVNTMSLIGLSLMWGHMLDMINIWFLPLTILTLLAGFGNEIRKRAD
Ga0181377_10071637F035273AGGAMNQTYKVWDSQRKDMTLYTPKKLYKIVVEYPISNRTLEFIGMDRGSCIMQAEVAKEVDDLMLMRSEEEITLLQKEKI
Ga0181377_10071638F040601GAGGMGNVHYTIKVIEPDKEYLKTFTSSTLDECRQHAQEYLWNCPEPSKYMYVATRIKNESNI
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