NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181377_1008701

Scaffold Ga0181377_1008701


Overview

Basic Information
Taxon OID3300017706 Open in IMG/M
Scaffold IDGa0181377_1008701 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2523
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035273Metagenome172Y
F040601Metagenome161Y
F046983Metagenome150Y
F085562Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0181377_10087014F085562GAGMDDFTRKSVEKFDKGTVRAAEKLIDSSPELKKIRSIKDGLKPSEITTGVNDAQYKAGYDNIKWSKDKPKANFKIRVNGKLINPDEEE
Ga0181377_10087015F046983AGGAGMKIPDSWKAESTHKTMGVNTMSLLGLSLMWGHMLELISLWFLPLTILSILAGFGNEVRKRDA
Ga0181377_10087016F035273AGGAMNQTYKVWDSQRKDMTSYTPKQLYKIVVEYPVTNRELEFIGMDRGSCIMQAEVAKEQDDIMLMRSEEAITVLHKEK
Ga0181377_10087017F040601GAGGMANVEYIIKVIEPDKEYLKTFSTLTLDDCRQQAQEYLWSCPENTKYLYVNTRIKNESNI
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