Scaffold Ga0181377_1011824

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0181377_1011824

Scaffold Ga0181377_1011824

Overview

Basic Information
Taxon OID	3300017706 Open in IMG/M
Scaffold ID	Ga0181377_1011824 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2070
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-29.499	Long. (^o)	-71.609	Alt. (m)		Depth (m)	12
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072833	Metagenome	121	Y
F077171	Metagenome	117	N
F092854	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_10118241	F077171	N/A	TLADSRGKSYVAQNGIDICNKEMHKAVKRGSGLEELNLIREINHADTVFKAWLNAESMLVANRIIESNTERFSDEKIINKKLDE
Ga0181377_10118243	F072833	AGG	MKIGDKIRFLCFGIPATGVIYEIDKANKTISVLAEDGYKYPNIQTFKELPKKKKDIPPWYILK
Ga0181377_10118246	F092854	N/A	MYKQITNMDPLRQYIREYVMYLYNAKIADADADFQWKHPSDIEHPIQPGYPGDLKGFPYDSSQNKLPPAYTRKRSTAKPHF

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.