NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181377_1014477

Scaffold Ga0181377_1014477


Overview

Basic Information
Taxon OID3300017706 Open in IMG/M
Scaffold IDGa0181377_1014477 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1820
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003169Metagenome / Metatranscriptome504Y
F003920Metagenome / Metatranscriptome462Y
F004715Metagenome / Metatranscriptome427Y

Sequences

Protein IDFamilyRBSSequence
Ga0181377_10144772F004715AGGAMIPYTDDEMKWISKGKKKRRSNQTADGQPPRDDPRMHTRAWGIKTTIEVDGKQYVVPVQL
Ga0181377_10144773F003920N/AMTVCAVAFHENTFAVFELREELQIRIMNLWELFQQLEYVTPDQRAIVYEEIDHIRQEIQHIIDQLIQHDRSQHP
Ga0181377_10144774F003169N/AAMIKYPLYKKNNSRKNTLLYPGLTTVSLARIITYMQYYYVMCQKGSVMHRCYVQLESESADILHDSLEQRYDLVQVCPVAQSEVQPDIVISPAP

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