NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1000035

Scaffold Ga0181369_1000035


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1000035 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36669
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (31.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003188Metagenome / Metatranscriptome502Y
F057295Metagenome / Metatranscriptome136Y
F059880Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0181369_100003547F003188N/AMKSLKNNIRKVLKSRLDINYRISTKLPNRETMNKKIFIDVLEQMRKIEDRRDFLLQEIGMDMTVYEDQFFNVIENLFKLAFNKSQLGLIQMYLYQLSPDKEWDGKLTLEEGKSEQVVDFKSPNDVWNVIKKFDGND
Ga0181369_100003557F059880AGTAGMKFDNTDEFERVFKTHDKEITDAIFEGIEEAYKFHKKSAYLFEISFKEAELVYEITLPSTQFELALESCMDHYRNIGETDLSIDVYILQKEIRKWLS
Ga0181369_100003558F057295AGGAMVKLIYLDGEYYQLVRDIAVERVMGNMEGLKAWRDMLHCDHVLKYSGKYLMVRRVLDAEIIEEL
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