NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1000980

Scaffold Ga0181369_1000980


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1000980 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8121
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (13.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002164Metagenome / Metatranscriptome588Y
F008944Metagenome / Metatranscriptome325Y
F040719Metagenome / Metatranscriptome161Y
F053219Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0181369_100098016F002164AGAAGLSHRKYVAQRMAQLQNEIFQEAMATGLVNMEKRKQLLKYKEHLKHL
Ga0181369_100098017F040719N/AMTNKVKPIFNSFKEYIEAENMIFKTLSSRASVTIGSKNNKVKG
Ga0181369_10009804F008944N/AMKKFNGMESNLIIDALQFYVTQVERDILKMEEDGKRSIFAPGFYTMISKELKEKVKSMTKKEKV
Ga0181369_10009805F053219N/AMKYAIFDMDDTLCTLKHRKDAASKNGKNKIDFNILFDSKLVEYDLPEDHVVELAEILNMFNTKIIIMTARPYYMEEATKKWLKDHRIPYFKLITKEKHKVFQKSSLWKESKLQELLQDISIEQIVLSIDDNKDNQAMFESYGIPVFDPLLH
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