Basic Information | |
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Taxon OID | 3300017708 Open in IMG/M |
Scaffold ID | Ga0181369_1001007 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8016 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (41.18%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Subarctic Pacific Ocean | |||||||
Coordinates | Lat. (o) | -20.099 | Long. (o) | -70.892 | Alt. (m) | Depth (m) | 20 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004990 | Metagenome | 416 | Y |
F008915 | Metagenome / Metatranscriptome | 326 | Y |
F015659 | Metagenome | 253 | Y |
F017558 | Metagenome / Metatranscriptome | 240 | Y |
F026438 | Metagenome | 198 | N |
F046315 | Metagenome | 151 | Y |
F059875 | Metagenome | 133 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181369_100100716 | F017558 | N/A | MFFIIFKNKNNILTSYSNQIFSTEAEATDYAKRSLKKKDVWQVVRYDTENYNKYWYKT |
Ga0181369_10010072 | F004990 | GGA | MYGDPKKKCCFCKKGADLKEGNKYYCCDHYSLYVLGKPMNQIEKELNDPITK |
Ga0181369_10010074 | F008915 | N/A | MGFIVDNEITLDLYEMQSASHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLNIKFEFHANVGGVPDLIFKDLRLQVRTQLPKDNNKNSLIIRPKAKQGELYILIIDEAPKFKILGFVNSTFVLGQEQWKTTFGLNRPFCYSIPPEKLTPIELLKNGTWN |
Ga0181369_10010075 | F059875 | N/A | MTVLILIFGVITNDGQLDLVKVPNSELKNINSCEIAIEKNLKWVDNPNFEQNSLPHGFYTYKNRVVMLQYCTENGVYSG |
Ga0181369_10010076 | F046315 | N/A | MNHLMNKKFMEYSVNSSYNSKFVESYMKRNDLLPKEFRFRRSALDLLLKQSNKKISDFVKDTYKPNEQKNKLAQISKILNPKPNAPKYFTENDLANDLAHWFNDFLQLDETVAPNFFVGEMVQIFCVGTLFGNGQIGMHKKNEKHKINIHPKYASFQAIESLVESKRGLMMLFKPSKNIDRNANNRTVICQDKKTKVHWFGFLEPKSNGRFDIIDKSQSTGKTIGNLAENIQISWSAEIKAAYYPTIYNT |
Ga0181369_10010077 | F026438 | N/A | MANHINVIGESYKKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFSGGTLIHLIVQDSLTKGMKVADVIKSEKIQNKINEYEPLDEKDKKKFEFIVKSAQETALNHLNNIAELGGQEWQDEQEQVLWTPPVKTYWLMYIDLVSKTLLGDLKNKFGTATLTKTKGWTYTNVKCPERPFYSDVQQVSLYNKATGLKPFLSYASNCDRKLFTQENCEDLSPENLEKALKELMIYEIAWEKKLELADGDLDTLAWLCCPDFSDIKKKSFWWTGVAQEQIDRLLKHYE |
Ga0181369_10010079 | F015659 | AGGA | MKQRTLKDAIQQFRQNIEDSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTESTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKVVKDKTFENGHKVNYPKDEPIEDKKSIKQLADEWIEVLKKTATHSASVGKFEQNLNPLRQSYLSDLKQINSDLIQQQRIDQEYISLQKQITNRKK |
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