NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1001007

Scaffold Ga0181369_1001007


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1001007 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8016
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004990Metagenome416Y
F008915Metagenome / Metatranscriptome326Y
F015659Metagenome253Y
F017558Metagenome / Metatranscriptome240Y
F026438Metagenome198N
F046315Metagenome151Y
F059875Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0181369_100100716F017558N/AMFFIIFKNKNNILTSYSNQIFSTEAEATDYAKRSLKKKDVWQVVRYDTENYNKYWYKT
Ga0181369_10010072F004990GGAMYGDPKKKCCFCKKGADLKEGNKYYCCDHYSLYVLGKPMNQIEKELNDPITK
Ga0181369_10010074F008915N/AMGFIVDNEITLDLYEMQSASHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLNIKFEFHANVGGVPDLIFKDLRLQVRTQLPKDNNKNSLIIRPKAKQGELYILIIDEAPKFKILGFVNSTFVLGQEQWKTTFGLNRPFCYSIPPEKLTPIELLKNGTWN
Ga0181369_10010075F059875N/AMTVLILIFGVITNDGQLDLVKVPNSELKNINSCEIAIEKNLKWVDNPNFEQNSLPHGFYTYKNRVVMLQYCTENGVYSG
Ga0181369_10010076F046315N/AMNHLMNKKFMEYSVNSSYNSKFVESYMKRNDLLPKEFRFRRSALDLLLKQSNKKISDFVKDTYKPNEQKNKLAQISKILNPKPNAPKYFTENDLANDLAHWFNDFLQLDETVAPNFFVGEMVQIFCVGTLFGNGQIGMHKKNEKHKINIHPKYASFQAIESLVESKRGLMMLFKPSKNIDRNANNRTVICQDKKTKVHWFGFLEPKSNGRFDIIDKSQSTGKTIGNLAENIQISWSAEIKAAYYPTIYNT
Ga0181369_10010077F026438N/AMANHINVIGESYKKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFSGGTLIHLIVQDSLTKGMKVADVIKSEKIQNKINEYEPLDEKDKKKFEFIVKSAQETALNHLNNIAELGGQEWQDEQEQVLWTPPVKTYWLMYIDLVSKTLLGDLKNKFGTATLTKTKGWTYTNVKCPERPFYSDVQQVSLYNKATGLKPFLSYASNCDRKLFTQENCEDLSPENLEKALKELMIYEIAWEKKLELADGDLDTLAWLCCPDFSDIKKKSFWWTGVAQEQIDRLLKHYE
Ga0181369_10010079F015659AGGAMKQRTLKDAIQQFRQNIEDSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTESTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKVVKDKTFENGHKVNYPKDEPIEDKKSIKQLADEWIEVLKKTATHSASVGKFEQNLNPLRQSYLSDLKQINSDLIQQQRIDQEYISLQKQITNRKK

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