Scaffold Ga0181369

Basic Information
Taxon OID	3300017708 Open in IMG/M
Scaffold ID	Ga0181369_1001007 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017708 Open in IMG/M

Scaffold ID

Ga0181369_1001007 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8016
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (41.18%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8016

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (41.18%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-20.099	Long. (^o)	-70.892	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Subarctic Pacific Ocean

Coordinates

Lat. (^o)

-20.099

Long. (^o)

-70.892

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F015659	Metagenome	253	Y
F017558	Metagenome / Metatranscriptome	240	Y
F026438	Metagenome	198	N
F046315	Metagenome	151	Y
F059875	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100100716	F017558	N/A	MFFIIFKNKNNILTSYSNQIFSTEAEATDYAKRSLKKKDVWQVVRYDTENYNKYWYKT
Ga0181369_10010072	F004990	GGA	MYGDPKKKCCFCKKGADLKEGNKYYCCDHYSLYVLGKPMNQIEKELNDPITK
Ga0181369_10010074	F008915	N/A	MGFIVDNEITLDLYEMQSASHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLNIKFEFHANVGGVPDLIFKDLRLQVRTQLPKDNNKNSLIIRPKAKQGELYILIIDEAPKFKILGFVNSTFVLGQEQWKTTFGLNRPFCYSIPPEKLTPIELLKNGTWN
Ga0181369_10010075	F059875	N/A	MTVLILIFGVITNDGQLDLVKVPNSELKNINSCEIAIEKNLKWVDNPNFEQNSLPHGFYTYKNRVVMLQYCTENGVYSG
Ga0181369_10010076	F046315	N/A	MNHLMNKKFMEYSVNSSYNSKFVESYMKRNDLLPKEFRFRRSALDLLLKQSNKKISDFVKDTYKPNEQKNKLAQISKILNPKPNAPKYFTENDLANDLAHWFNDFLQLDETVAPNFFVGEMVQIFCVGTLFGNGQIGMHKKNEKHKINIHPKYASFQAIESLVESKRGLMMLFKPSKNIDRNANNRTVICQDKKTKVHWFGFLEPKSNGRFDIIDKSQSTGKTIGNLAENIQISWSAEIKAAYYPTIYNT
Ga0181369_10010077	F026438	N/A	MANHINVIGESYKKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFSGGTLIHLIVQDSLTKGMKVADVIKSEKIQNKINEYEPLDEKDKKKFEFIVKSAQETALNHLNNIAELGGQEWQDEQEQVLWTPPVKTYWLMYIDLVSKTLLGDLKNKFGTATLTKTKGWTYTNVKCPERPFYSDVQQVSLYNKATGLKPFLSYASNCDRKLFTQENCEDLSPENLEKALKELMIYEIAWEKKLELADGDLDTLAWLCCPDFSDIKKKSFWWTGVAQEQIDRLLKHYE
Ga0181369_10010079	F015659	AGGA	MKQRTLKDAIQQFRQNIEDSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTESTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKVVKDKTFENGHKVNYPKDEPIEDKKSIKQLADEWIEVLKKTATHSASVGKFEQNLNPLRQSYLSDLKQINSDLIQQQRIDQEYISLQKQITNRKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181369_1001007

Overview

Ecosystem & Geography

Associated Families

Sequences