NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1001634

Scaffold Ga0181369_1001634


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1001634 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6346
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002399Metagenome / Metatranscriptome563Y
F004603Metagenome431Y
F019114Metagenome231Y
F048285Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0181369_100163411F002399AGGTGGMSLKTKSSKSIIGQLRKKYGLKDNTPIHKVEIAMSPKDWKAFSEALTFPNGKPTQRGK
Ga0181369_10016344F019114AGGAGMKQLEARMIEARDEFYRNKRRKGFMAFWWSDPLHYLLVLEVAIADASSKSINFEAIVKLLPNSMGSRSTVATVLDDFVARGYMCKKVGKDKRERVYTICKDSTVLMNDWFTKRDFSLKAV
Ga0181369_10016347F048285N/AMKIDPHQLEQATAFILETNKYIYEQARELATQHLEAEDNKSFKSRIKRYEPESKETLLHFADEITAWAECEKNYPLMDFIDKFFKIKKGY
Ga0181369_10016349F004603AGGAMIFSININGLIVDWCYTINNQEKQYHQTWIPKIVDIQILTKDLNGLTVSEVRKTILEDIQPDIQMVRDNTNKKAKARRQKNV
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Institute for Fundamental Biomedical Research
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