Scaffold Ga0181369

Basic Information
Taxon OID	3300017708 Open in IMG/M
Scaffold ID	Ga0181369_1002230 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017708 Open in IMG/M

Scaffold ID

Ga0181369_1002230 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5409
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5409

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-20.099	Long. (^o)	-70.892	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Subarctic Pacific Ocean

Coordinates

Lat. (^o)

-20.099

Long. (^o)

-70.892

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017147	Metagenome / Metatranscriptome	242	N
F020191	Metagenome / Metatranscriptome	225	N
F074760	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10022304	F020191	N/A	MPKLENIKSLYQSSAYRDILHDINGVVFPFDPQWKNIGISVSGGADSALMSVLLCSIISQLNSKTNVHIITNTRCWKTRPWQRHNSLEVFAWLTNAFPKIQFKRHENFIAPDLEWGSKGPNIVDEYGKLKSGNQIELRAHAEYVAHTEKLDAWYCGVTKNPDKEFDGRLVARDIEDATLDRLIKTHMGGLACHPFTYVQKDWIVAQFKKLGIMDLFSLTRSCEGDNETYPEVFGDLDYKTYVPGTPVPVCGKCFWCKEREWGVSKCQD
Ga0181369_10022305	F074760	N/A	MLQKLDTKTDSKILFDLVKHLPEGKNVLNRPTGNFFYDAWEVLPEYKGTAIEDLLKQLPDHGEARVIIMKPGESYSAHADIDDRYHITLDAEQSFLHDIENEMMYATKPDNTVYLMNAGLLHSASNYGYKNRYQLVVRKRLQHNTMMNDPRQVVMISTDPVYNLRYLFDSSFSILLNKMAKEKQIDSFARINDTKIKFLCEGSKINELLKMQQICGFKIDIVYA
Ga0181369_10022306	F017147	N/A	MLDWNNFYKFKGGLAVTNMLYEPLVSNDKKIFYMNWNPNAYFENTEMTDELYNYWFSREVMYLFILKNKKYIPEVIDIDYKKRKITFRWYDKSLHWLLETKQIDSIPNWQDKIKSIKDDLEKDNTYKINMYPHTFYFDDEDNAHIMDLYGCTDKNTRYLDTKYLKPLIRNDRFDKFIVNDQLDTHELYKETIKTNYAEWPGDFLNA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181369_1002230

Overview

Ecosystem & Geography

Associated Families

Sequences