NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1002994

Scaffold Ga0181369_1002994


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1002994 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4662
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019754Metagenome228Y
F022313Metagenome215Y
F023484Metagenome210N
F044802Metagenome154Y
F075429Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0181369_100299413F075429N/AKERLMTGTTELPETVTEFLEDGSVAVVVGHLRGWVSSAHLVEPKANQLMRKWLEEKSEALLNEDYDGAS
Ga0181369_10029944F019754N/AMNHNTDDLMPCELGEWPPSEADIEEMFKAGEIDDYDRERALDELIAQELWRESLPCSVPSPQELNPGLK
Ga0181369_10029945F044802AGGMTNDPTATALYRAREDLRMLKTCPTWYDHLDKVEAAMAEEDRIYDIRVAAGWELDEGGWCVPSPETGEMILEWDWLNFGLSYPEDANCCSN
Ga0181369_10029947F023484N/AMERLRTTKHITNHICLMNINTKTGELLIATLGRYTSKTEKIIFFKTRAGSLVSSYYISTFNSIKEGDGLMLSNEWGRDQVLDAGQVAKCKTFIRNHS
Ga0181369_10029948F022313N/AMTYHYKPEQEYELEKLERILKELQSVIEREKKRHMMDEHLSHSMRDLLEYEIIPLLEAEVYYDPTPQY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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