NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1003854

Scaffold Ga0181369_1003854


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1003854 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4087
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003612Metagenome477Y
F021862Metagenome217Y
F028002Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0181369_10038544F003612AGGAGMPTTPNNFQVTTAIGETDNYIGADISFFHITLKDNGASAVDVRTELGYDETVHNVIRAVLDRGTMVHQRIENASTGRIDIAMERAGWTASTLQTAIRDLGSTVGVNNKDLRGSVVTETELKLDNS
Ga0181369_10038545F028002AGGAGGMDKIIKEIKKNKKAMIGVAVIVVIFAWMLVSGDTTPVDAQ
Ga0181369_10038547F021862GGAGGMFARLRRWFGRYKKHILDSYDPPRPTVYVLGKKKYIKKKVLNRPKGLKGPNIK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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