NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1003975

Scaffold Ga0181369_1003975


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1003975 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4015
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015097Metagenome257Y
F027052Metagenome / Metatranscriptome196N
F028037Metagenome193N
F040631Metagenome161N

Sequences

Protein IDFamilyRBSSequence
Ga0181369_10039752F028037AGGAMPCYKITYTRRDMPSPCGAIKTAHTEDEAIKCLTNGSKTKGYKLKKTNVPITITKITEL
Ga0181369_10039753F027052N/AMTTDLEKARKYTKTMLEALEVTGRAMYFCLNHPNAPEFKSYRKILIGAHERMSKDTAEMLTQLDKPEPPYDPTEEELSQHG
Ga0181369_10039758F040631N/AMNDKALTKYRQVTGACTRFIERHQDNEILEDEAQTLINDNKASRSESDWQVIKDFQDECCRTVYKCTKKGLIKPATDYVPTHPTL
Ga0181369_10039759F015097N/AMKYTYMLNMDNDKAESCDVIVKFNTNDSLEFDGFTSIVSEPPLYSDDLAYLEEWVIQGRERWEPMGTFSHTNRERM
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