NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1011342

Scaffold Ga0181369_1011342


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1011342 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2271
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009067Metagenome323N
F018932Metagenome / Metatranscriptome232Y
F050306Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0181369_10113421F050306N/AKSKLMINYLDIKERKDVTVKKMFEIYKTDNKYRNRITWDAHYLITGWKHIQQTKDERQK
Ga0181369_10113422F009067N/AMKDKSKQVWYLYANNIKELKRECYEIIATLYVQLGQAPEAEIVVQMTNLFCNDLATNYGSMELDEVKYALNKHIRENDGPHFVNVPTWNEALRSYKMTKALKRQTNQIDQYEVYKKRVESFSKVIDKREIKKIGNANNNK
Ga0181369_10113426F018932N/ALKSNRATRHQEIYKRTKNGLELVLPKKITTDIGFQLMFGYREDYRIEQENIQRNADRYLAKTYLDVEDFKKYI
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