NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1012617

Scaffold Ga0181369_1012617


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1012617 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2134
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019821Metagenome227N
F021526Metagenome218Y
F026851Metagenome196Y
F081221Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0181369_10126171F019821AGGAGMTINNKTTLQELIDLGLFKAADIEKLNNKITRGADRAARKALVEGTMSAIKALVESEAHDGNRYWSVKPAAHSLGFMSYIETDRGTILKALTKLTEEGYLTKVGLKKVDGKLTELDKTQVNAFQLRYIVTPVEEADAAVDEEGS
Ga0181369_10126172F021526GGAGMRYFSIDYRSPPSGMGQIIDTTKPEKVGDQYNFILVDYGSDPHEDPSYVMTKYFYSEQAAEEGWAGAVLPQIFQFLRDQKVTHVYDGELAYEYEGGCENDFEGLFTLDRWIEIMSSYL
Ga0181369_10126173F026851AGGAMTKQQLQQLLKDPVNMTPLEHAEVGRMKQAYFSAVAQETEAYISAKEAYDDAKEFMDLQDPGEREVLMQLLKNMRDCERNMTIIATELETHFGISA
Ga0181369_10126175F081221AGAAGGMDDVLHTLYNILILLTGFSAVICASLTAVALINILSSSMLTYRDDKLLLAWALPSGLFFSGLLMVMLGWT
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