Basic Information | |
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Taxon OID | 3300017708 Open in IMG/M |
Scaffold ID | Ga0181369_1012617 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2134 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Subarctic Pacific Ocean | |||||||
Coordinates | Lat. (o) | -20.099 | Long. (o) | -70.892 | Alt. (m) | Depth (m) | 20 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F019821 | Metagenome | 227 | N |
F021526 | Metagenome | 218 | Y |
F026851 | Metagenome | 196 | Y |
F081221 | Metagenome | 114 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181369_10126171 | F019821 | AGGAG | MTINNKTTLQELIDLGLFKAADIEKLNNKITRGADRAARKALVEGTMSAIKALVESEAHDGNRYWSVKPAAHSLGFMSYIETDRGTILKALTKLTEEGYLTKVGLKKVDGKLTELDKTQVNAFQLRYIVTPVEEADAAVDEEGS |
Ga0181369_10126172 | F021526 | GGAG | MRYFSIDYRSPPSGMGQIIDTTKPEKVGDQYNFILVDYGSDPHEDPSYVMTKYFYSEQAAEEGWAGAVLPQIFQFLRDQKVTHVYDGELAYEYEGGCENDFEGLFTLDRWIEIMSSYL |
Ga0181369_10126173 | F026851 | AGGA | MTKQQLQQLLKDPVNMTPLEHAEVGRMKQAYFSAVAQETEAYISAKEAYDDAKEFMDLQDPGEREVLMQLLKNMRDCERNMTIIATELETHFGISA |
Ga0181369_10126175 | F081221 | AGAAGG | MDDVLHTLYNILILLTGFSAVICASLTAVALINILSSSMLTYRDDKLLLAWALPSGLFFSGLLMVMLGWT |
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