NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1018109

Scaffold Ga0181369_1018109


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1018109 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1734
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042011Metagenome159Y
F057750Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0181369_10181092F042011GAGMKRKQQYETSARIAMIALIAMVVSLTISIAIGKSTVTEEAIPPTAMQEYTYEWTPTPMEQRKMDSLYRIDAVTKADMDSIRDMIDAILIKLD
Ga0181369_10181093F057750AGAAGMTKENYLFQGTREKAVREAQAVVDFMVPGKVRVYCEWCEDTNRWYMVGAYQSYIEIGGKVKTVTSYKTEKMDRYYDVSVFAAFFKQRTAYMNANYYWQIQARENNIHPAMFKEWFDSKKRTTSDMVSA
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