NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1028690

Scaffold Ga0181369_1028690


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1028690 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1318
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024418Metagenome206Y
F035078Metagenome173Y
F046640Metagenome151Y
F062181Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0181369_10286903F046640GAGGMKVGDLVRVHLLNDLDWYPAIGVFMGYQGRKDGYTSHSFVFVEGKNRRFETMDVKAIK
Ga0181369_10286904F024418GGAGMIGKLVRHIRFDAIGIVVDHFVYSEFMGGYKVKFLKPVQHTHLPSGFMEEIVGKVTSFEEVTNESR
Ga0181369_10286905F035078GAGGVKEQATKLEIFRSYLLDRVKESRVGAIDLNPDGDPTFEVMPELQNYTWVIDLAKREGVAATPTSGSAGARLTITEERTNV
Ga0181369_10286906F062181GGAMKVGDLVKMKYPRKPQHGGSGVIVENDNTFVSLPNSPNWFRVIWTDSQTSLTGESWLKEQQLEVISERTSN
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