NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1030171

Scaffold Ga0181369_1030171


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1030171 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1280
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005813Metagenome / Metatranscriptome389Y
F006217Metagenome378Y
F027536Metagenome194Y
F029123Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0181369_10301712F005813AGGAGMKLYKNSEGVWAGTQADARKMCGKTYSTVDVPVDKPNLLKFLNLNQVGSYTSNDKQGTIAGEIDTSNKSAMSWIRWSHDCMCRGQYEDAKEMLRKGLELASDRTTTSDG
Ga0181369_10301713F006217GGAGVIELLLAMVEEQNPIHKYCMDKHEHWTGRAACVQELRHAQRKMEVEELRQFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYIGSDKQKRSKC
Ga0181369_10301714F029123AGGAGMSYEVWFGKDGNWFGYHSFKNRMEAVACELKYLKIFRDLTVEIRRREHNAY
Ga0181369_10301715F027536AGGAGGMRISKVVPIDRVINDCKRRADDAWWDGNDDEARLHEQEQKLYELDKEEGILWVPNF
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