NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1036070

Scaffold Ga0181369_1036070


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1036070 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1148
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067202Metagenome126Y
F081883Metagenome114N
F089518Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0181369_10360701F089518N/AKKGGECFAYHSTKDTSELDRLVAKYLSMKGITIEVKKRNLS
Ga0181369_10360703F067202GGAGMRYKDIVITAEDLECHTIDTVAEAISEHIIDLGLATPETLTGFNWRLDVRMRMDNDDT
Ga0181369_10360704F081883GAGGMTPRIEKIYNLIYYSDFDEYEIKQLAIGLLGTTLNDVSWHQTADTVSNYKLDDERELDFDGEDNLR

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