Scaffold Ga0181369_1085071

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181369_1085071

Scaffold Ga0181369_1085071

Overview

Basic Information
Taxon OID	3300017708 Open in IMG/M
Scaffold ID	Ga0181369_1085071 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	669
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-20.099	Long. (^o)	-70.892	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F006347	Metagenome / Metatranscriptome	375	Y
F076487	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10850711	F076487	N/A	KDKKIMTIYGKTLELNENTNDALYNLYEMKRETLAFNEGGNKYGYENLLDDTDFFTPVDFTDTYNVKGYTDEQVVEILGEFVQW
Ga0181369_10850712	F006347	AGGAG	MVDRIEQLIETLEQEINDGYNTLPDNQANDEGKTYVNSAQSTLYELQKQVAELKQGLKLGKNFSLLGDNQNG
Ga0181369_10850713	F002747	GGA	MAKDANRFFVNVCLEVYVPDQGCGDKAVTNESLDANWFANEICSQIPKLVNKEWEYSERPYSVNWAHKGK

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