NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181387_1000769

Scaffold Ga0181387_1000769


Overview

Basic Information
Taxon OID3300017709 Open in IMG/M
Scaffold IDGa0181387_1000769 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7011
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007289Metagenome / Metatranscriptome354Y
F061782Metagenome131N
F062776Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0181387_100076911F062776AGGAGMDKYSNPDVFIVLVGFIGIILLGALLGEVAVWVAKILGYEYEEKPNVDFWQRLQDGEVLDAENMFSNE
Ga0181387_10007693F007289N/AMRLIALERANNRCEWPTCINYDQKLEMAHLVDIGMGGSKTRKYDIENVAMLCKLHHDLYDGRSISLAKKEYRVLLKSYLYYARN
Ga0181387_10007696F061782AGAAGMKKIYNGIIAILKETAAQTFTILGFAISWFLLTGTAKDIVGIMILISFVVWFATINFRK
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